Isolation of local strain of Bacillus sp. SM-11, producing PHB using different waste raw as substrate

 

Sachin Kumar1*, Manoj Kumar Sharma1, Manoj Kumar Sharma2, Gautam Kumar3

1Department of Bioinformatics, JV College, Baraut (Baghpat), Uttar Pradesh, India.

2Department of Botany, JV College, Baraut (Baghpat), Uttar Pradesh, India.

3M. Tech. (Biotechnology), Meerut Institute of Engineering and Technology (MIET), Meerut, India.

*Corresponding Author E-mail: sachinsuryan@gmail.com

 

ABSTRACT:

Polyhydroxyalkalonates (PHAs) have numerous industrial and medical applications, is being used in various medical applications such as scaffold, suture, heart valve and drug delivery etc. Poly 3-hydroxy butyrate (PHB) is the most common and important family member of PHAs. The bacterial strains which are able to produce higher quantities of PHA using low-cost substrates are always in demand.  In the present study, a local strain of Bacillus sp. SM11 isolated from soil was screened for ability to produce biopolymer i.e., PHB (polyhydroxybutyrate). Various factors which have been found to have an impact on PHB production by the selected capable bacterial isolates were optimized viz., organic waste source (soya extract, whey, molasses, corn extract, and distillery waste liquor), nitrogen source (peptone, beef extract, yeast extract, ammonium chloride, and ammonium sulphate), pH, and trace elements. An optimized PHB yield of 3.53g/L was obtained using whey as a source of carbon, added with 1% of yeast extract as a nitrogen source at pH 6.0 in presence of calcium as a trace element. The outcome of the present study indicates that isolate is among one of the high PHB producing microorganism, using whey as a carbon source.

 

KEYWORDS: Polyhydroxybutyrate (PHB), Milk whey, Molasses, Distillery waste, Bacillus sp.

 

 


1. INTRODUCTION:

Polyhydroxyalkanoates (PHA), is a family of biopolyesters with diverse structural units (Fig-1). PHAs, synthesized by many Gram positive and Gram-negative bacteria as storage compounds, are deposited as insoluble inclusions in the cytoplasm 1. Nearly 150 different hydroxyalkanoates are identified, as constituents of bacterial storage polyesters [2].  Polyhydroxyalkanoate (PHAs) aliphatic polymer are being used as biodegradable plastic due to their potentially hydrolysable ester bonds 3.

 

Fig-1: General chemical structure of Polyhydroxyalkalonates (PHAs), where R represents an alkyl group, value of x varies from 1 – 4 and n can be 1000 to 10,000. In case of PHB x =1 and R is CH3.  

 

The homopolymer Poly 3-hydroxy butyrate (PHB) (Fig-1) is the first member of PHAs family to be discovered in microbes and most common member of PHA [4]. PHB have a high degree of polymerization; are highly crystalline, optically active, isotactic, piezoelectric and insoluble in water with other features which make them highly competitive with polypropylene and other synthetic plastics (Table-1).

 

Table-1. Physical properties of poly (3-hydroxybutyrate) P (3HB) compared to polypropylene 5.

Properties

P (3HB)

PP

Crystalline melting point, °C

175

176

Crystallinity, %

80

70

Molecular weight, Daltons

5 x 105

2 x 105

Glass transition temperature, °C

15

- 10

Density, g/cm3

1.25

0.905

Young’s modulus, GPa

3.5

1.7

Tensile strength, MPa

40

38

Extension to break, %

6

400

UV resistance

Good

Poor

 

PHAs, along with their mechanical properties, owing to their other imperious properties such as, biocompatibility, high immunotolerance, biodegradability and being less toxic, they are favorably being used as in various biomedical applications (Table-2).

 

Table-2. Medical Applications of Polyhydroxybutyrate (PHB) and its copolymers

Medical Applications of Polyhydroxybutyrate (PHB) and its copolymers

References (Miscellaneous)

·        Sutures, repair patches, slings, Nerve repair devices

·        Cardiovascular patches, cardiovascular devices

·        Orthopedic pins, Adhesion barriers, stents

·        Guided tissue repair/regeneration devices

·        Articular cartilage repair devices,

·        Nerve guides, tendon repair devices,

·        Bone-marrow scaffolds,

·        Tissue engineering and wound dressings

·        Drug Delivery etc.

[6, 7, 8, 9, 10, 11, 12, 13, 14]

 

The medical industry has mostly been utilizing PHAs obtained by chemical synthesis. Production cost, commercially available PHA is relatively higher than that of traditional synthetic plastics. Therefore, bacterial strains which are able to produce large quantities of intracellular PHA using low-cost substrates are always in demand.

 

In fact, to commercialize naturally produced PHAs, widespread effort has been dedicated to reducing the production cost by the development of bacterial strains that utilize waste bye product and more competent fermentation/recovery processes because the price of the substrate has the largest influence on the production cost of PHA15,16,17.

 

In the present study, soil and sewage samples were collected from different region of Meerut, Uttar Pradesh, India. Several PHB accumulating bacteria were isolated from these soil and sewage samples. The most promising bacteria among those were further characterized using morphological, biochemical techniques. The isolated bacterium is predicted belonging to the genus Bacillus and tested for the potential of production and accumulation of PHB using different waste bye products.

 

2. MATERIAL AND METHODS:

Investigations were carried out at the Department of Botany J.V. College Baraut Baghpat on the isolation of poly -3-hydroxy butyrate (PHB) producing bacteria from different sources and their screening for maximum PHB production. The efficient strains were selected, culture parameters were optimized. The general procedure and techniques adopted are as follows:

 

2.1 Collection of samples and Isolation of Bacteria:

Soil and sewage samples were collected from various places of Meerut. The collected samples were serially diluted and plated on nutrient agar medium [18]. The characteristic bacterial colonies were, chosen, picked up, purified and preserved on nutrient agar slants till further use.

 

2.2 Rapid screening of bacterial isolates positive for PHB production:

Viable colony method of screening using Sudan Black-B dye was used for testing the PHB production ability of all the isolates [19]. For rapid screening of PHB producers, nutrient agar medium supplemented with 1 per cent glucose was sterilized by autoclaving at 121°C for 20 minutes and cooled to 45°C. The medium was poured into sterile petri plates and allowed to solidify. The petri plate was divided in four equal parts and a bacterial isolate was spotted in each part then the plates were incubated at 30°C for 24 hours. Ethanolic solution of (0.02%) Sudan Black B was spread over the colonies. The plates kept undisturbed for 30 minutes. Thereafter washed with ethanol (96%), the excess stain was removed from the colonies. The colonies with dark blue color were considered as positive for PHB production. All the positive isolates were given some code numbers based on their source of isolation.

 

2.3 Quantification of PHB production and selection of isolates:

All the Sudan Black-B positive isolates were subjected to quantification of PHB production [20]. The bacterial cells containing the polymer were centrifuged at 10,000 rpm for 10 min. and the pellet washed with acetone and ethanol to remove the unwanted materials. The pellet was re-suspended in equal volume of 4 per cent sodium hypochlorite and incubated at room temperature for 30 min. Then the mixture was again centrifuged. Supernatant was discarded while the cell pellet containing PHB was washed with acetone and ethanol again. Lastly, hot chloroform was used to dissolve the polymer (PHB) granules.

 

The chloroform was filtered and to the filtrate, concentrated 10 ml hot H2SO4 was added. The addition of sulfuric acid converts the polymer into crotonic acid which is brown colored. After cooling down the solution, the absorbance was taken at 235nm using sulfuric acid as blank. PHB concentration is read against the standard curve of PHB prepared via pure PHB (Sigma, USA). PHB concentration is expressed in terms of g/l of culture.

 

2.4 Batch Fermentation and culture conditions:

Studies were carried out in batch fermentations in 250 ml Erlenmeyer flasks containing 100 ml of different wastes to be used as carbon source viz., soya extract, corn extract, molasses, milk whey, and distillery waste liquor was taken without any pretreatment after simple filtration. The medium was sterilized with autoclave medium (i.e., organic source). The flasks were inoculated with selected bacterial isolate and maintained at 30ºC and 120rpm for 48 h.

 

2.5 Optimization of different parameters for maximum PHB Production:

In the course of study, various parameters have also been optimized with the selected isolate to get the maximized PHB production. Different set of experiments were performed adding different nitrogen source viz., nitrogen source Peptone, Beef extract, Yeast extract, ammonium sulphate and ammonium chloride (@ conc. of 1%) to the medium, similarly impact of different pH (5.0 to 9.0), trace elements viz., ZnSO4, CuSO4, FeCl3, CaCl2 and MgSO4, and temperature (28 – 45) was studied.   

 

2.6 Characterization of most efficient PHB producing bacterial isolate:

The selected, most efficient PHB producing bacterial isolate was subjected to a set of morphological, physiological and biochemical tests for the purpose of identification. Biochemical tests i.e., citrate utilization, catalase activity, motility, indole production, methyl red, utilization of different sugars (glucose, fructose, sucrose xylose, sorbitol etc.), Vogues Proskauer etc. were carried out with 24 hrs old cultures21. The data thus obtained was compared Bergey’s Manual of Determinative Bacteriology to come to some conclusion22,23.

 

3. RESULTS:

From the total of 8 samples (6 soil samples, 2 sewage water samples) collected from different regions of Meerut, India, a total of 28 representative bacteria were isolated, purified and maintained as pure cultures.

 

Out of total 28 isolates 10 isolates were found to accumulate PHB. Out of 10 isolates, 8 were from the soils samples and 2 were from the waste sewage water collected from different regions of Meerut accumulated PHB (Table-3).

 

Table-3: Description of sample collected and the isolates with their label

S. No.

Sample collected

No. of Representative Isolates with the given Code number

Sudan Black B positive isolates

1.

6 Soil samples 

17 (SM-1, to SM-17)

SM-1, SM-4, SM-5, SM-7, SM-8, SM-11, SM-12, and SM-13

2.

2 Sewage water

11 (WM-1, to WM-11)

WM-1, and WM-3

 

Out of Sudan Black-B positive isolates, 5 isolates were strongly stained i.e., SM-5, SM-8, SM-11, SM-12, WM-3 and hence tested for PHB yield. SM-11 was found the highest PHB producing isolate among them (Fig-2). Hence SM-11 isolate was selected for further study.

 

Fig-2: Preliminary comparison of PHB production among different isolates

 

3.1 PHB yield with different organic waste by SM-11:

Among the different organic sources tested to evaluate their effects on PHB yield, milk whey was found to be the best organic source. It yielded a mean PHB of 1.45 g/l. This was followed by distillery waste with a mean PHB of 1.25g/l and the lowest yield is by molasses 1.1 g/l.

 

3.2 Effect of different nitrogen sources on PHB yield:

As a result of using different nitrogen sources with milk whey as an organic source on PHB yield by the selected isolate SM-11, yeast extract resulted to be the best source.  It yielded a mean of 2.375g/l, followed by peptone with the mean PHB yield of 2.3g/l. next was from ammonium chloride with a mean PHB yield of 2.125g/l. Then was ammonium nitrate with a yield of 2.05g/l and the lowest PHB yield was by beef extract with a mean PHB yield of 1.7 g/l.

 

3.3 Effect of trace elements:

In the presence of CaCl2, the isolate produced 2.5g/l PHB, while in presence of   CuSO4, MgSO4, ZnSO4, and FeCl3 the isolate resulted in the production of 1.3g/l, 1.75g/l, 1.45g/l and 1.2g/l PHB respectively.

3.4 Effect of pH on PHB yield by SM-11:

Keeping other conditions and media, as optimized earlier, the effect of pH was studied from 5 to 9. It was found that at the pH 6, the bacterial culture resulted in maximum PHB production (Fig-3).

 

Fig-3: With optimized composition of media, comparison of PHB production by the isolate SM-11 at different pH

 

3.5 Effect of incubation temperature on PHB yield by SM-11:

With all other conditions and media composition as optimized earlier, the effect of temperature was studied keeping incubation temperature 28, 30, 35, 37, 40, and 45ºC. Incubation temperature of 37°C was found to be best for PHB production, as it resulted in maximum yield (Fig-4).

 

Fig-4: Effect of temperature on PHB production by the isolate SM-11, with other parameters optimized

 

Though the highest PHB production was shown to be at 45ºC, but as we can see there is not that much significant difference between 35ºC, 37ºC and 45ºC. While maintaining that much high incubation temperature will be a matter of significant cost, hence the PHB production and incubation temperature can be decided accordingly.

 

3.6 Characterization and Identification of isolate SM-11

The morphological and biochemical characteristics of SM-11 are summarized in the Table-4. As per the results morphological and biochemical test of isolate SM-11 obtained, shown in the table-3, according to Bergey’s Manual of Systematic Bacteriology [23], preliminary identification indicates that SM-11 isolate was most probably a Bacillus sp.

 

Table-4: Morphological and biochemical characteristics of SM-11

Test

Result/Reaction

Shape, Gram Staining 

Rod Shaped, Gram Positive

Spore Staining

Spore Forming

Carbohydrate Fermentation 

Lactose

+

Fructose

+

Maltose

-

Sucrose

+

Mannitol

-

Biochemical Tests

Casein Hydrolysis

+

Citrate Utilization

+

Urease

+

Catalase

+

Amylase

+

Voges Proskauer

-ve

 

4. DISCUSSION:

Plastic is undoubtedly causing a serious environment pollution and termed as cancer of nature [24]. Synthetic plastic being almost non-degradable. Public has been made aware about the ill effects of plastics on health and environment 25, 26.

 

However, in modern days, plastic has become an indispensable part of life, because of its various application in different sectors of our life. Therefore, to minimize the harmful effects on environment, biodegradable polymers are produced, which are analogous in properties with synthetic plastic, and hence termed as biodegradable plastic or bioplastic 27, 28. Biodegradable plastic waste can be degraded in newly designed biodigesters resulting in production of gas (60% to 65% methane), ammonia and manure 29.

 

Poly (ß-hydroxybutyrate) (PHB) is a biodegradable plastic that has numerous applications in medical sector and belongs to the family of polyhydroxyalkanoates (PHA).

 

Present work was aimed to isolate and identify PHB producing bacteria by utilization of inexpensive alternate carbon sources preferably the waste byproducts of other industry. The isolate SM-11 from the study found to be promising in that way. Using milk whey as an alternate carbon source and other optimized conditions the isolate was able to produce as much as 3.53g/l of PHB, which is quite improved in comparison of studies in the past (Table-5).

 


Table 5: Comparison of the competence of PHB production using different waste byproducts by some of the microbial isolates in the past with the microbe isolated in the present study.

Concentration of PHB produced by the best isolate in the study (units are as reported in concerned research paper)

Carbon Source

Bacteria

Reference

0.3g/L

4% Beet molasses

B. cereus M5 strain

[30]

2.2g/L

% date syrup added with mineral salt medium

Not mentioned

[31]

0.88g/L

Nutrient Broth

Isolate-2 (not identified)

[32]

2.10 g/L

Nutrient Agar

Isolate (not identified)

[33]

285mg/100ml

wheat brawn as a carbon source with 0.2% peptone

Azotobacter vinelandii.

[34]

0.225g/100ml

Nutrient Agar

Isolate AJ11 (not identified)

[35]

14.44µg/ml

Nutrient Agar

Bacterial isolate from soil (not identified)

[36]

48µg/10ml

Seasame oil

Alcaligenes eutrophus

[37]

3.53g/L

Milk Whey with 1% yeast extract

Bacillus sp.

Present study

 


Hence, the bacterial isolate resulted from the present study is expected to be promising. Though further molecular studies are required to identify the species and strain of isolate. Further studies at bioreactor level and optimization of parameters are endorsed to analyze the competence of the isolate at commercial level.

 

5. ACKNOWLEDGEMENT:

The authors are thankful to the Principal, Janta Vedic College, Baraut, Dr. Manav Kumar Choudhary, Department of Chemistry, JV College, Baraut for providing facilities and being helpful to carry out this work.

 

6. CONFLICT OF INTEREST:

The authors declare no conflict of interest, financial or otherwise

 

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Received on 09.02.2021           Modified on 21.06.2021

Accepted on 25.08.2021         © RJPT All right reserved

Research J. Pharm. and Tech. 2022; 15(5):2053-2058.

DOI: 10.52711/0974-360X.2022.00339